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Clarissa and Anna publish a paper titled "Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms" in Molecular Cell!

  • juanifuxman
  • Jul 27
  • 1 min read
Most human TF genes encode multiple isoforms differing in DNA-binding domains, effector domains, or other protein regions. The extent to which this results in functional differences between isoforms remains unknown. In this collaborative review, we systematically compared 693 isoforms of 246 TF genes, assessing DNA binding, protein binding, transcriptional activation, subcellular localization, and condensate formation. Relative to reference isoforms, two-thirds of alternative TF isoforms exhibit differences in one or more molecular activities, which often could not be predicted from sequence. We observed two primary categories of alternative TF isoforms: "rewirers" and "negative regulators," both of which were associated with differentiation and cancer. Our results support a model wherein the relative expression levels of, and interactions involving, TF isoforms add an understudied layer of complexity to gene regulatory networks, demonstrating the importance of isoform-aware characterization of TF functions and providing a rich resource for further studies.
Most human TF genes encode multiple isoforms differing in DNA-binding domains, effector domains, or other protein regions. The extent to which this results in functional differences between isoforms remains unknown. In this collaborative review, we systematically compared 693 isoforms of 246 TF genes, assessing DNA binding, protein binding, transcriptional activation, subcellular localization, and condensate formation. Relative to reference isoforms, two-thirds of alternative TF isoforms exhibit differences in one or more molecular activities, which often could not be predicted from sequence. We observed two primary categories of alternative TF isoforms: "rewirers" and "negative regulators," both of which were associated with differentiation and cancer. Our results support a model wherein the relative expression levels of, and interactions involving, TF isoforms add an understudied layer of complexity to gene regulatory networks, demonstrating the importance of isoform-aware characterization of TF functions and providing a rich resource for further studies.

 
 
 
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Juan Fuxman Bass, PhD

Associate Professor of Biology

 

Boston University

5 Cummington mall

Boston, MA 02215

​

e-mail: fuxman@bu.edu

Phone: (617) 353-2448

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