Devlin publishes paper "MACAW: a method for semi-automatic detection of errors in genome-scale metabolic models" in Genome Biology!
Genome-scale metabolic models (GSMMs) are used to predict metabolic fluxes, with applications ranging from identifying novel drug targets...
Clarissa and Anna publish a paper titled "Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms" in Molecular Cell!
Most human TF genes encode multiple isoforms differing in DNA-binding domains, effector domains, or other protein regions. The extent to...
Congratulations Dr. Patalano!
Sam successfully defended her dissertation titled, “Use of High-throughput Screening Approaches to Delineate Immune and Pluripotency Gene...
Benedetta publishes a review “Applications of high-throughput reporter assays to gene regulation studies” in Current Opinion in Structural Biology!
In this review, we discuss the different ways that high-throughput reporter assays, such as MPRAs and STARR-seq, can be employed to...
ICARus: a pipeline to extract robust gene expression signatures from transcriptome datasets
We developed the R package ICARus, designed to streamline the application of independent component analysis (ICA) and extraction of...
Fuxman Bass Lab Retreat 2025!
Yet another educational and enjoyable lab retreat this year at Juan’s house! We discussed everything from concerns related to NIH funding...